libera/##covid-19/ Tuesday, 2021-06-29

de-factohmm interesting in that preprint the Delta actually looks as bad as Beta or even worse00:01
de-factovery interesting data in that preprint there LjL ^^00:14
BrainstormNew from The Lancet (Online): [Correspondence] AZD1222-induced neutralising antibody activity against SARS-CoV-2 Delta VOC: The SARS-CoV-2 B.1.617.2 Delta variant of concern (VOC) continues to drive a sharp increase in COVID-19 cases in the UK, with a current doubling time of 3·5–16 days,1 consistent with previous pandemic waves during 2020–21, [... want %more?] → https://is.gd/l6RJXs00:33
LjLi don't like it when you say "interesting" ;(00:37
BrainstormUpdates for Switzerland: +2 deaths (now 10885) since 9 hours ago00:38
LjLi don't like that in several ways, including BNT being "significantly higher" than AZ00:41
BrainstormNew from Francois Balloux: @BallouxFrancois: R to @BallouxFrancois: I got flack for "going for the man rather the ball". I understand, and anticipated it. Though, if someone presents themselves as the 'inventor of the mRNA vaccine' and pretend it kills as many as it saves, I was left with no real choice to first quash their claim to fame.9/ → https://is.gd/DmLjQN02:05
BrainstormUpdates for India: +316 deaths (now 396730) since 17 hours ago02:11
BrainstormNew from BBC Health: Covid: Masks upgrade cuts infection risk, research finds: Wearing a high grade FFP3 mask can almost entirely protect health workers from Covid, research finds. → https://is.gd/GdehmI02:25
BrainstormNew from BBC Health: (news): Covid: Parents 'were treated like criminals' as their son lay dying → https://is.gd/GKdDIL02:35
BrainstormUpdates for Vietnam: +630 cases (now 16041) since 23 hours ago — France: +19 deaths (now 111063) since 23 hours ago — Canada: +435 cases (now 1.4 million), +11 deaths (now 26215) since 23 hours ago — Netherlands: +389 cases (now 1.7 million) since 23 hours ago02:36
LjL-MatrixPeter: no, I can't :(02:44
pwr22What's interesting?02:44
pwr22Can you see my messages now btw?02:44
LjL-MatrixPeter:  https://www.medrxiv.org/content/10.1101/2021.06.23.21259327v1 was the interesting thing, for de-facto's definition of interesting which seems to mostly coincide with depressing/scary for me02:45
LjLpwr22, i lied, well, i retroactively lied, I could see your messages exactly 2 seconds after posting that I can't (or at least 2 seconds after that showed up on IRC)02:46
* LjL-Matrix uploaded an image: (233KiB) < https://libera.ems.host/_matrix/media/r0/download/matrix.org/qtmxksfrPhMblthzPwWSimRK/lies.png >02:47
LjL-Matrixwith Matrix, time's reversed!02:47
BrainstormUpdates for Cyprus: +314 cases (now 75099) since a day ago03:38
BrainstormNew from r/WorldNews: worldnews: Brazil’s Bolsonaro Linked to Alleged Corruption in Covid Vaccine Buying → https://is.gd/NTUZO304:28
BrainstormUpdates for Channel Islands: +73 cases (now 4293) since a day ago04:40
BrainstormUpdates for United Kingdom: +16985 cases (now 4.8 million) since 21 hours ago — France: +22 deaths (now 111074) since 21 hours ago — Netherlands: +280 cases (now 1.7 million) since 21 hours ago05:05
tsunderecan virus become infectious from e.g. groceries in front of a fan or shaking clothes?05:06
LjLtsundere, unlikely, but it's really hard to tell for sure05:07
BrainstormUpdates for Belize: +52 cases (now 13189) since 3 days ago — Somalia: +41 cases (now 14933) since 2 days ago — San Marino: +1 cases (now 5091) since 26 days ago05:30
BrainstormNew from The Indian Express: World: US lawmakers urge Biden administration to provide assistance to India battered by second wave of Covid-19 → https://is.gd/omJGXZ05:31
BrainstormNew from EurekAlert!: How two California hospitals prevented the spread of a deadly fungal infection during the pandemic: In the midst of the COVID-19 pandemic, infection preventionists at two Southern California hospitals took extreme measures to stop the spread of a deadly fungus that has emerged in the U.S. and around the world. The two will detail [... want %more?] → https://is.gd/CboxqU06:23
BrainstormNew from EurekAlert!: Young adult cancer survivors reluctant to get COVID vaccines: A new paper in JNCI Cancer Spectrum indicates that many survivors of adolescent and young adult cancers hesitate to obtain COVID-19 vaccinations. → https://is.gd/6eU6MS06:44
BrainstormNew from The Indian Express: World: Third dose of AstraZeneca vaccine found to boost immune response → https://is.gd/UTxHkm06:54
BrainstormNew from The Indian Express: World: Three Australian cities lock down in fight against Delta Covid-19 variant → https://is.gd/CH4reA07:15
BrainstormUpdates for England, United Kingdom: +18478 cases (now 4.1 million), +3 deaths (now 112661) since 23 hours ago — Scotland, United Kingdom: +3285 cases (now 274217) since 23 hours ago — Moscow Oblast, Russia: +2722 cases (now 309125), +20 deaths (now 6478) since 23 hours ago — California, United States: +1612 cases (now 3.8 million) since 23 hours ago07:34
BrainstormNew from The Indian Express: World: Brazil passes 500,000 Covid deaths, a tragedy with no sign of letup → https://is.gd/ooYhl807:36
BrainstormNew from The Indian Express: World: Worried by Delta variant, WHO officials urged vaccinated people to keep wearing masks → https://is.gd/fyrQ0W07:47
BrainstormNew from The Indian Express: World: Mixing Astra and Pfizer shots creates strong immune response → https://is.gd/x2FIbQ08:17
BrainstormUpdates for India: +37566 cases (now 30.3 million), +931 deaths (now 397345) since 23 hours ago08:36
BrainstormNew from Science-Based Medicine: A New Covid-19 Myth?: A correspondent suggested I should have known that the pandemic was over months ago. That's obviously a myth. But where did that idea come from? The post  first appeared on Science-Based Medicine . → https://is.gd/w3ZuBt09:09
BrainstormNew from The Indian Express (Health): Health: High sugar levels post-Covid? Check out these ayurvedic tips → https://is.gd/EljfVH10:02
darsielol10:04
darsiesorry :)10:04
jacklswhaha what's funny darsie?10:08
jacklswhigh sugar level?10:08
darsieayurveda10:09
BrainstormNew from r/WorldNews: worldnews: WHO Says Fully Vaccinated People Should Continue to Wear Masks → https://is.gd/Xn17uc10:12
BrainstormNew from Francois Balloux: @BallouxFrancois: R to @BallouxFrancois: Adenoviruses are double stranded DNA viruses. There are seven species recognised in humans (A-G). They primarily cause 'common colds' in healthy people. Adenoviruses are used as vectors for vaccines (e.g. AZ and Sputnik V COVID19 vaccines).5/https://www.biorxiv.org/content/10.1101/2021.06.28.450199v1https://is.gd/SShNGH10:23
BrainstormUpdates for Armenia: +116 cases (now 224967), +4 deaths (now 4514) since 23 hours ago — Germany: +226 cases (now 3.7 million) since 21 hours ago10:41
BrainstormNew from r/WorldNews: worldnews: Australia’s top medical body refuses to endorse PM’s announcement that under-40s can get AstraZeneca → https://is.gd/tbmdwI11:26
BrainstormUpdates for Georgia: +1194 cases (now 365068), +22 deaths (now 5297) since a day ago11:30
BrainstormNew from BMJ: Covid-19: The countries that have mandatory vaccination for health workers: What would you do to keep your job? It’s a question that healthcare workers in Texas were confronted with in April, when local hospital network Houston Methodist required its staff to be vaccinated... → https://is.gd/S6BSgl11:57
generaoh wow11:59
BrainstormNew from The Indian Express (Health): Fashion: Marc Jacobs’ post-pandemic runway: Parading puffers in patterns → https://is.gd/fYn56112:08
BrainstormNew from r/WorldNews: worldnews: Ireland might demand a vaccine to drink inside pubs and restaurants → https://is.gd/Gm47Il12:29
BrainstormUpdates for Fiji: +312 cases (now 4144), +4 deaths (now 21) since 21 hours ago12:33
BrainstormNew from The Indian Express (Health): Health: Boy, 13, diagnosed with rare brain disease post-Covid: Know all about acute necrotizing encephalopathy of childhood → https://is.gd/HzEdlz12:39
BrainstormNew from Scientific American: Health: How Dangerous Is the Delta Variant, and Will It Cause a COVID Surge in the U.S.? → https://is.gd/B7AsSa12:50
BrainstormNew from r/WorldNews: worldnews: COVID-19: Russia sees record daily death toll with 652 fatalities → https://is.gd/ETFeLN13:01
BrainstormNew from BMJ: Covid-19: Third vaccine dose boosts immune response but may not be needed, say researchers: The interval between the first and second doses of the Oxford AstraZeneca vaccine can be extended up to 10 months and a third dose of the vaccine provides a strong boost to the immune response,... → https://is.gd/rrDF4N13:32
BrainstormUpdates for Romania: +73 cases (now 1.1 million), +294 deaths (now 33605) since a day ago13:41
BrainstormNew from BMJ: Covid-19: Events pilot finds “no substantial outbreaks,” but experts point to gaps in evidence: Just 28 positive cases of SARS-CoV-2 infection were identified among more than 58 000 people who attended nine large events in April and May included in a pilot programme set up to examine the risks... → https://is.gd/Psgtzy13:43
BrainstormNew from ECDC: Countering online vaccine misinformation in the EU/EEA: This study provides insights for national public health authorities into the factors behind the spread of vaccine misinformation online and the options and capacities needed for responding to it. → https://is.gd/7lwCSc13:54
BrainstormNew from The Indian Express (Health): Health: My Covid diary: ‘First it was the infection; then it turned into stress and anxiety’ → https://is.gd/sTdRgd14:04
BrainstormNew from r/WorldNews: worldnews: Military violated rules by collecting information on Canadians, conducting propaganda during pandemic: report → https://is.gd/dEsX1614:25
BrainstormUpdates for Libya: +452 cases (now 193238) since a day ago14:37
BrainstormUpdates for Jersey: +71 cases (now 3456) since 3 days ago15:08
BrainstormNew from StatNews: Pharma: STAT+: Pharmalittle: How Biogen and FDA formed a back channel to push an Alzheimer’s drug; Sanofi to dive into mRNA vaccine development → https://is.gd/3IRE9N15:29
BrainstormUpdates for Iran: +12717 cases (now 3.2 million), +142 deaths (now 84127) since a day ago — Nepal: +1728 cases (now 636916), +20 deaths (now 9071) since a day ago — Switzerland: +129 cases (now 702875), +2 deaths (now 10887) since 14 hours ago15:33
BrainstormNew from EMA: What's new: PIP: Opinion/decision on a Paediatric investigation plan (PIP): Recombinant human monoclonal antibody to GM-CSF (GSK3196165), decision type: , therapeutic area: , PIP number: P/0266/2020 → https://is.gd/gqhh1w15:50
BrainstormNew from EuroNews: Europe saw record low numbers of refugees seeking asylum last year: The report released by the European Asylum Support Office noted that the pandemic played a major role in less people seeking refuge. #BrusselsBureau → https://is.gd/rYZp5i16:11
BrainstormUpdates for Germany: +208 cases (now 3.7 million) since 23 hours ago16:35
BrainstormNew from Retraction Watch: Paper claiming two deaths from COVID-19 vaccination for every three prevented cases earns expression of concern: A study published last week that quickly became another flashpoint for those arguing that COVID-19 vaccines are unsafe has earned an expression of concern. The original paper, published in the MDPI title Vaccines, [... want %more?] → https://is.gd/pVqSD316:43
BrainstormUpdates for Iraq: +6558 cases (now 1.3 million), +35 deaths (now 17156) since a day ago — Portugal: +1746 cases (now 877195), +6 deaths (now 17092) since 22 hours ago — Saudi Arabia: +1567 cases (now 486106), +15 deaths (now 7804) since a day ago17:37
BrainstormNew from WebMD: Poorly Managed Diabetes Raises Odds for More Severe COVID: A new study shows people hospitalized with diabetes who hadn't been taking their medication had more severe cases of COVID-19. → https://is.gd/awlo9O17:56
BrainstormUpdates for Italy: +97 cases (now 4.3 million), +5 deaths (now 127505) since 19 hours ago18:02
BrainstormUpdates for Cuba: +3080 cases (now 188023), +17 deaths (now 1270) since 23 hours ago — Myanmar: +1312 cases (now 155697), +11 deaths (now 3320) since 23 hours ago — United Kingdom: +12171 cases (now 4.8 million) since 23 hours ago18:33
BrainstormNew from r/WorldNews: worldnews: Moderna's COVID-19 vaccine shows promise against Delta variant in lab study → https://is.gd/qk692z18:49
BrainstormNew from The Indian Express: World: EU member states can accept WHO authorised vaccines like Covishield for travel certificate: Official → https://is.gd/trUQNC19:11
BrainstormUpdates for Canada: +14 deaths (now 26219) since 21 hours ago19:35
BrainstormNew from Politico: Alcohol: Passports please! Irish will need vaccine proof to enter pub → https://is.gd/7ffE3a19:42
BrainstormNew from WebMD: Acupuncture On Point for COVID stress Relief: For many,  acupuncture -- an ancient way of using needles to treat pain -- is the last post-COVID-19 relief method they haven’t already tried. → https://is.gd/kJG8uW20:03
BrainstormUpdates for Spain: +7091 cases (now 3.8 million), +40 deaths (now 80829) since 23 hours ago20:06
BrainstormNew from Derek Lowe: @ViralVectorTV: RT by @Dereklowe: Want to highlight that intra-tumoral #mRNA injection (being explored by #Moderna in a Ph1/II trial) can induce a pretty nice abscopal effect in pre-clinical cancer model.https://stm.sciencemag.org/content/11/477/eaat9143https://is.gd/J1pHt720:13
BrainstormNew from WebMD: Pfizer, Moderna Vaccines Give More Protection Than Known: The researchers found the Moderna and Pfizer vaccines provide robust protection for at least 12 weeks after a second dose and could provide low-level protection for at least a year. → https://is.gd/nHKcyx20:24
BrainstormUpdates for Kosovo: +178 cases (now 107749) since a day ago — Singapore: +114 cases (now 62667) since a day ago20:31
BrainstormNew from Bloom Lab: @jbloom_lab: R to @jbloom_lab: Finally, as scientists, we need to continue to do our best to avoid political / opinion-based arguments about #SARSCoV2 origins / early spread, and remain focused on following two questions: (1) How can we get more data? (2) How can we better analyze the data we have? (15/n) → https://is.gd/mxdqui20:46
ArsaneritI've been doubly vaccinated, but remain cautious about travelling.  I'm not too worried about getting sick, but I might still get infected and infect my unvaccinated wife.20:58
BrainstormNew from CIDRAP: COVID-19 cut Brazilian life span almost 2 years in 2021: Mary Van Beusekom | News Writer | CIDRAP News Jun 29, 2021 Life expectancy at birth dropped 1.3 years in 2020 and 1.8 years in early 2021 owing to COVID. → https://is.gd/i3RCpK21:07
BrainstormUpdates for France: +33 deaths (now 111088) since 22 hours ago21:08
BrainstormNew from Ars Technica: Science: Juul to pay N.C. $40M and stop targeting kids after igniting vaping “epidemic“ → https://is.gd/LSN42521:39
BrainstormNew from Scientific American: WHO Urges Vaccinated People to Wear Masks; CDC Still Says No Need: World Health Organization experts urged vaccinated people to keep wearing masks, in contrast with guidance from the U.S. Centers for Disease Control and Prevention. → https://is.gd/obLoY922:10
BrainstormUpdates for Canada: +27 deaths (now 26232) since 23 hours ago22:10
stickbaitanything new and interesting?22:13
stickbait"However, including the results obtained before the pandemic revealed that there was little difference in volume in the same individual after having contracted SARS-CoV-2 and that those that caught the virus had, on average, a smaller thalamus22:14
stickbaitsmaller thalamus -> more apt to catch the infection. its associated to psychoses, schizophrenia, lack of impulse control prob due to dopamine receptors in thalamus etc22:16
stickbaitidk. but just as a counter argument, that it may not cause the loss of grey matter in thalamus, perhaps. more evidence needed imo22:16
BrainstormUpdates for Malawi: +188 cases (now 35897), +7 deaths (now 1194) since 22 hours ago22:35
lavadonutyou have a small thalamus22:36
nixonixits bigger than average!22:40
BrainstormNew from FDA Press Releases: Coronavirus (COVID-19) Update: June 29, 2021: The FDA has sent to Congress its Report on Drug Shortages for Calendar Year 2020, which includes a section on the agency’s drug shortage efforts in response to COVID-19. The FDA is also working to implement the drug shortage-related provisions of the Coronavirus Aid, Relief, & [... want %more?] → https://is.gd/yNeOWM22:42
nixonixmaybe it was the normal uridine curevac used, instead of smaller amount of mrna. why curevac didnt perform22:44
nixonixkariko has the patent for using pseudouridine, so maybe they couldnt lisence it or tried to save the fees22:45
de-factoi think not using pseudo-uridine limited their acceptable dose to 12µg (in terms of side effects tolerance), hence also their ability to produce s-protein. my hope was they were able to optimize translation frequency and numbers per mRNA molecule so much that this would not limit them, but obviously it did22:46
de-factothen they tested in peru, with all those highly evasion optimized mutants, so probably that also played a role22:48
nixonixthey tried to use dsRNA purification to reduce ifn-I response that activates PKR shutting down ribosomes protein synthesis and activates rnase L that then destroys all rna, also single-stranded as in the vaccine22:48
de-factoafaik 3 out of each 4 participants from their HERALD study were from south america22:49
nixonixbecause in the process of synthesizing mrna there are contaminants, and in this case the essential would be double-stranded rna they tried to get rid off22:49
nixonixbtw, kariko and weisman found that too, i think22:49
de-factodouble stranded rna would be very bad in terms of side effects afaik22:50
nixonixweissman22:50
nixonixso are those patents preventing another competing mrna vaccine production? or is it just a cost issue22:50
nixonixthey prob should get the next chemistry nobel anyway22:51
de-factoi have no idea, but i think they dont have a license for pseudo-uridine22:51
de-facto.title https://www.cell.com/molecular-therapy-family/molecular-therapy/fulltext/S1525-0016(16)32681-822:51
Brainstormde-facto: From www.cell.com: Incorporation of Pseudouridine Into mRNA Yields Superior Nonimmunogenic Vector With Increased Translational Capacity and Biological Stability: Molecular Therapy22:51
BrainstormNew from CIDRAP: US COVID-19 cases rise, likely due to Delta variant: Stephanie Soucheray | News Reporter | CIDRAP News Jun 29, 2021 Southern, Western states and areas with low vaccination rates saw the greatest COVID increases. → https://is.gd/uhPErB22:52
nixonixhas anyone followed other mrna vaccines, like sanofis, that chinese etc, are they using pseudouridine? or other interesting details revealed about those?22:56
nixonixand i think there was a taiwanese mrna vacc coming too22:57
nixonixhttps://www.scmp.com/news/china/science/article/3135111/taiwan-working-dna-vaccine-covid-19-could-be-stored-room22:58
nixonixmaybe there was another one, or i remember wrong22:59
nixonixno it was thailand23:01
nixonix.title https://www.bangkokpost.com/thailand/general/2132263/chula-revs-up-trials-of-mrna-covid-vaccine23:01
Brainstormnixonix: From www.bangkokpost.com: Chula revs up trials of mRNA Covid vaccine23:01
nixonixthey just inoculated 12 monkeys, and if all goes well - hmm - they will order a batch for human trials23:02
nixonixsigh, it was 13 monkeys, not 1223:02
nixonix.title https://www.genengnews.com/covid-19-candidates/chulalongkorn-university-center-of-excellence-in-vaccine-research-and-development-chula-vrc-national-research-council-of-thailand-nrct-and-bionet-asia/23:02
Brainstormnixonix: From www.genengnews.com: Chulalongkorn University Center of Excellence in Vaccine Research and Development (Chula VRC), National Research Council of Thailand (NRCT), and BioNet-Asia23:02
BrainstormNew from WebMD: Almost All U.S. COVID-19 Deaths Now in the Unvaccinated: Investigators looked at federal data for deaths from COVID-19 in May 2021 and figured out how many were among unvaccinated Americans. → https://is.gd/Jiw6bm23:03
nixonixthe designer has worked with weissman23:05
nixonixbtw, that just approved alzheimer drug, it was from Biogen. anyone remembers that company? from spring 202023:06
nixonixfrom december:23:07
nixonix.title https://www.nbcboston.com/news/coronavirus/biogen-conference-in-boston-now-tied-to-more-than-300000-coronavirus-cases/2254941/23:07
de-factoBiogen?23:07
Brainstormnixonix: From www.nbcboston.com: Biogen Conference in Boston Linked to More Than 300,000 COVID-19 Cases, Science Journal Study Suggests – NBC Boston23:07
nixonixas you see, almost random happenings can shape the path of the epidemic the way, not even the best multi-group models couldnt project23:10
nixonix-"nt"23:10
de-factoyeah wait for the soccer celebrations23:17
de-factoi am very glad germany lost23:17
de-factoi heard already 2 out of each 3 cases are male23:17
de-factoin UK23:17
dTalwhy?23:18
de-factomore soccer celebrations with male participants?23:18
de-factoidk it was a reporter in tagesschau interviewed about wembley stating that23:18
nixonixare german soccer fans allowed to go to russia and bring you indian variant?23:19
nixonixand any mandatory quarantines or something?23:19
de-factonope23:21
de-factomandatory quarantine because of mutant area23:21
nixonixin finland they just did it. some of them, but not nearly all, are now in 2 weeks quarantine23:21
de-factohttps://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus/Transport/Archiv_Risikogebiete/Risikogebiete_aktuell_en.pdf?__blob=publicationFile23:21
nixonixbut it takes time to trace them, and write them the quarantine order. sometimes people get those when theres a day or two left, and sometimes when its past the time23:22
nixonixwhy do we call it soccer instead of football... i guess because its shorter to type23:23
de-factoBotswana Brazil Eswatini India Lesotho Malawi Mozambique Namibia Nepal Portugal Russian Federation South Africa United Kingdom of Great Britain and Northern Ireland incl. all British Overseas23:24
de-factoTerritories, Isle of Man and the Channel Islands Uruguay Zambia Zimbabwe23:24
de-factoalthough probably 1 out of each 3 cases already is Delta here23:25
de-factoabove are variant areas23:26
de-facto(as are we soon i fear)23:27
nixonixtheres been around 4k finnish soccer fans in russia during these matches. more, if you include those russians living here that visited there. for a small country like this, it would be like 62k in germany23:28
nixonixaround 8% of them, if the true number was 4k, already found positive23:28
nixonixalmost half of them went in buses, because trains dont go there currently! 8h minimum, more when they came back and were stuck in customs, 10h. some of them continued with other buses to their home towns. also the local buses then23:31
de-factowow23:32
nixonixover half of them didnt even get tested at the border, because lack of personnel, and the health officials then decided to just let them through23:32
de-factothat sounds bad, did it have impact on incidence in .fi?23:32
de-factoincidence on rise since 10 days ago23:33
nixonixyeah, they have been doubled or so during the last few days. more in helsinki area23:33
de-factohttps://www.worldometers.info/coronavirus/country/finland/23:33
BrainstormNew from CIDRAP: COVID-19 Scan for Jun 29, 2021: Chinese COVID-19 vaccine in kids COVID-detecting masks Metabolic activators and COVID recovery → https://is.gd/1fQemS23:34
nixonixand they just removed most of restrictions in metropolitan area here, bars open to 1 am etc, lifting travelling restrictions and all. because you know, its a summer and last summer we didnt have many cases...23:34
nixonixand 18% of population already got the second dose (11-12 week intervals used here)23:35
de-factoalthough finland did very well so far in terms of prevalence23:35
nixonixand theres been talks, by some health officials that are in media daily, that maybe those restrictions should just go, when "risk groups will be vaccinated in 2 weeks"23:36
de-factoyeah i want to strangle them when i hear them say such things23:37
de-factolater they say with big eyes "it was delta"23:38
de-factonow we have the chance to cheaply bring down incidence to zero23:39
de-factoeven kill off the last highly selected and very fittest infection chains23:40
de-factoonce incidence went up again this will be exponentially more expensive in terms of ressources etc23:41
nixonixnot all of them agree though, but one certain female vaccine specialist chief doc from our health institute that media loves, have been touting these ideas recently. lets see whose stance will win23:41
nixonixnowhere in continental europe the cases will be taken to zero. it would require very strict border controls23:41
nixonixand stuff comes mostly with trucks, unlike in iceland, nz, aus23:42
de-factoyeah thats the problem, but still if every country would go for that and we would have strict external border controls with quarantine it would be possible23:42
nixonixbut very low cases and easy tracing would be nice23:42
Arsaneritde-facto: Don't you think that UK win will lead to more new cases than German win?23:43
de-factoright now unfortunately yes in UK23:43
nixonixeu doesnt want it. it has criticized finland a lot during this epidemic, demanding to open borders to other schengen countries23:43
ArsaneritWhat's the point of Germany indicating countries with delta variant as particularly risky when delta variant already dominates in Germany?23:44
Arsaneritde-facto: so then from a pandemic point of view German win might have been better?23:44
de-factoi guess so yes23:44
nixonixit would slow down the spread of indian variant, giving more time for vaccinations. also would help to keep the case numbers down for easy tracing. strict borders23:45
nixonixdenmark and norway are doing that23:45
de-factoArsanerit, hmm well in other areas (e.g. UK) incidence with delta is much higher (order of magnitude), so assuming travelers would mix in with that incidence and bring it back they would seed a lot more new infection chains with the VoC than if they would have stayed inside the country23:46
nixonixdanish soccer fans were allowed to go to - was it belgium or holland - just for a short under 12h trip and were in a bubble, to avoid quarantines23:46
Arsaneritindian variant = B.1.617.2 / delta?  or something else yet?23:47
de-factoyeah that one23:47
nixonixyep the most common of them here, currently anyway23:47
Arsaneritde-facto: but that's already true if going by regular incidence?23:47
de-factoi guess so23:47
de-factoArsanerit, we have to wait for the next RKI report, but i assume it will be 35% delta or such23:48
de-factotomorrow23:48
nixonixare they getting representative sample from every state?23:48
de-factoand those probably will have some delay, how long does it take to sequence those ?23:48
nixonixand without long delays?23:48
de-factorepresentative yes, not sure about the delays23:49
nixonixit depends. you can do it in a few hours, and for large batches in a day or two, but for some reason it usually takes here 1-2 weeks or more23:49
nixonixthey should use those pcr assays recognizing the variants23:49
nixonixfrench had one too. and british. and that eurofins commercial kit should be available now23:50
ArsaneritIt's clearly just a matter of time until it's >90%, unless it's replaced by something more agressive before that happens.  But considering that 54% have been vaccinated at least once, including 36% vaccinated twice, what level of restrictions would be needed to keep R<1 when the delta variant dominates?23:50
de-factohttps://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus/DESH/Berichte-VOC-tab.html23:50
Arsaneritsure the vaccinations should contribute to slowing down the spread even of the delta variant; bringing R down should be a function of vaccinations + lockdown; the more vaccinations, the less lockdown needed?23:51
nixonixits also about the existing immunity from infections23:52
nixonixso its easier for brits than most23:52
Arsaneritwhat's easier for Brits and why?23:52
nixonixuk should decide soon if they will lift the restrictions 2 weeks earlier, that would be the next monday i think23:53
Arsanerityou mean because in UK 48% have been fully vaccinated vs. just 32% in the EU?23:53
ArsaneritWhat restrictions still exist in the UK considering they can have a full football stadium?23:53
nixonixthey have higher infection prevalence than most. and certainly much higher than here, around 10-fold or so prob23:53
de-facto.title https://imgur.com/a/HuIp2AT https://i.imgur.com/W9rXHpf.jpeg src: https://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus/DESH/Bericht_VOC_2021-06-23.pdf?__blob=publicationFile23:54
Brainstormde-facto: From imgur.com: COVID Germany: SARS-CoV-2-VoCs B.1.1.7 B.1.351 B.1.617.2 and P.1 maps per district - Album on Imgur23:54
de-factonixonix, there extracted the maps23:54
de-factoits still in clusters23:54
de-factobut diffusion will flatten it out23:54
nixonixcase numbers? how about shares? randomized or those that were picked for sequencing more likely to come from clusters?23:56
de-factoArsanerit, exactly that i wanted to model, but did not find the time to properly do it yet23:56
Arsaneritde-facto: it sounds complicated to do it properly, maybe someone/s with more time/team/resources have tried?23:56
de-factoi started with fitting a logistic function on the vaccinations in Germany  vaccinations(t) = 0.835/(1 + 359 Exp[-t/32.3434]);23:56
ArsaneritIs it irresponsible to go bike touring under the present circumstances?  I don't want to bring delta back to my wife, who is still waiting for her appointment for her first dose.23:57
nixonixhow is it in berlin? share of 617.223:57
de-factothen i wanted to include a simple sinus amplitude of 42% seasonality with maximum in 2st of jan and minimum in 1st of July as multiplicative factor23:57
de-factofinally i wanted to assume exponentials for the variants and fit them on the seasonal vaccine model23:58
Arsaneritgood luck with your model, let us know how you validate it and what it say23:59
Arsaneritbye, goodnight23:59
de-factohe is consequent about leaving IRC at 00:00 oclock, impressive23:59

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